PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 309aa    MW: 34606.3 Da    PI: 6.7416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.81.3e-36111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+C+++C+lapyfp+eqpk f nvh+lFG+s ++k+l++lp+++r++am+s+++++ +r r Pv+G++g+ l+lq  +  +++el 
  XP_010550796.1  11 ACAACKYQRRRCSSECPLAPYFPSEQPKLFHNVHRLFGVSSLVKILQRLPPSQRPEAMKSIIFQSLVRDRSPVHGCLGLTLQLQYLIWLSQQELR 105
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l++++
  XP_010550796.1 106 LVNAR 110
                     98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.39710111IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-3511108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTVKGGGTNG ACAACKYQRR RCSSECPLAP YFPSEQPKLF HNVHRLFGVS SLVKILQRLP  60
PSQRPEAMKS IIFQSLVRDR SPVHGCLGLT LQLQYLIWLS QQELRLVNAR LHLFRQQQQQ  120
PRDAHPDNDH HHPSEDNHVS SQQQLDLGMV IPVKNSHACS SSSSSSYSSS ASPPLPFFSP  180
LPPPQQQQQV SYFNSCSDVN GYSSAENIPN TYNPYGGFCH YNGDDQRNNV TTIQSQHLNP  240
EIVSQDYDEI HQFFDIIDDR QSFVEETKEA YASSSSEGSL KGTTTQPLEH VGENELRSAA  300
TRFSLTSVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550796.10.0PREDICTED: LOB domain-containing protein 27
SwissprotQ9STS64e-79LBD27_ARATH; LOB domain-containing protein 27
TrEMBLR0HMD72e-98R0HMD7_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50012758e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-71LOB domain-containing protein 27